{
  "_id": "6a1eb4e2b25058d4daadd789",
  "Type": "Package",
  "Package": "sGBJ",
  "Title": "Survival Extension of the Generalized Berk-Jones Test",
  "Version": "0.1.1",
  "Authors@R": "c(person(given = \"Laura\",\nfamily = \"Villain\",\nrole = c(\"aut\", \"cre\"),\nemail = \"sistm.soft.maintain@gmail.com\"),\nperson(given = \"Thomas\",\nfamily = \"Ferte\",\nrole = \"aut\"),\nperson(given = \"Rodolphe\",\nfamily = \"Thiebault\",\nrole = \"aut\"),\nperson(given = \"Boris P.\",\nfamily = \"Hejblum\",\nrole = \"aut\"))",
  "Description": "Implements an extension of the Generalized Berk-Jones\n(GBJ) statistic for survival data, sGBJ. It computes the sGBJ\nstatistic and its p-value for testing the association between a\ngene set and a time-to-event outcome with possible adjustment\non additional covariates. Detailed method is available at\nVillain L, Ferte T, Thiebaut R and Hejblum BP (2021)\n<doi:10.1101/2021.09.07.459329>.",
  "License": "GPL (>= 3)",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.2",
  "URL": "https://github.com/lauravillain/sGBJ",
  "BugReports": "https://github.com/lauravillain/sGBJ/issues",
  "Repository": "https://lauravillain.r-universe.dev",
  "Date/Publication": "2025-04-11 15:05:46 UTC",
  "RemoteUrl": "https://github.com/lauravillain/sgbj",
  "RemoteRef": "HEAD",
  "RemoteSha": "c7ee17207ec9673dd8f8445ae0f1e687a77621ce",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-02 10:38:33 UTC",
    "User": "root"
  },
  "Author": "Laura Villain [aut, cre],\nThomas Ferte [aut],\nRodolphe Thiebault [aut],\nBoris P. Hejblum [aut]",
  "Maintainer": "Laura Villain <sistm.soft.maintain@gmail.com>",
  "MD5sum": "cba30672ac5636da7874d0807c20b458",
  "_user": "lauravillain",
  "_type": "src",
  "_file": "sGBJ_0.1.1.tar.gz",
  "_fileid": "c1d22c0075068630b37400ab0dad75ab49d54feff0ce9d0d84bce90fdee807cc",
  "_filesize": 101066,
  "_sha256": "c1d22c0075068630b37400ab0dad75ab49d54feff0ce9d0d84bce90fdee807cc",
  "_created": "2026-06-02T10:38:33.000Z",
  "_published": "2026-06-02T10:48:02.694Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79052352185,
      "time": 125,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7355470103"
    },
    {
      "job": 79052352182,
      "time": 123,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355469014"
    },
    {
      "job": 79052352305,
      "time": 160,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7355591409"
    },
    {
      "job": 79052352297,
      "time": 132,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355600069"
    },
    {
      "job": 79051943359,
      "time": 148,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355425829"
    },
    {
      "job": 79052352166,
      "time": 105,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355463068"
    },
    {
      "job": 79052352376,
      "time": 91,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7355457844"
    },
    {
      "job": 79052352276,
      "time": 110,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7355464837"
    },
    {
      "job": 79052352178,
      "time": 84,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7355455802"
    }
  ],
  "_buildurl": "https://github.com/r-universe/lauravillain/actions/runs/26814262525",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/lauravillain/sgbj",
  "_commit": {
    "id": "c7ee17207ec9673dd8f8445ae0f1e687a77621ce",
    "author": "Thomas Ferte <thomas.ferte@u-bordeaux.fr>",
    "committer": "Thomas Ferte <thomas.ferte@u-bordeaux.fr>",
    "message": "submitted to cran\n",
    "time": 1744383946
  },
  "_maintainer": {
    "name": "Laura Villain",
    "email": "sistm.soft.maintain@gmail.com"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "GBJ",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "survival",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "lauravillain",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 1,
  "_contributors": [
    {
      "user": "thomasferte",
      "count": 27,
      "uuid": 57225742
    },
    {
      "user": "lauravillain",
      "count": 26,
      "uuid": 54664321
    },
    {
      "user": "borishejblum",
      "count": 9,
      "uuid": 5277851
    }
  ],
  "_userbio": {
    "uuid": 54664321,
    "type": "user",
    "name": "lauravillain"
  },
  "_downloads": {
    "count": 196,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/sGBJ"
  },
  "_devurl": "https://github.com/lauravillain/sgbj",
  "_searchresults": 1,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/sGBJ.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/lauravillain/sgbj",
  "_realowner": "lauravillain",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2021-09-15"
    },
    {
      "version": "0.1.1",
      "date": "2025-04-14"
    }
  ],
  "_exports": [
    "sGBJ",
    "sGBJ_scores",
    "surv_calc_scores_stats"
  ],
  "_datasets": [
    {
      "name": "ls_test_results",
      "title": "A data file used for testing sGBJ",
      "object": "ls_test_results",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "dot-epsilon_matrix",
      "title": ".epsilon_matrix",
      "topics": [
        ".epsilon_matrix"
      ]
    },
    {
      "page": "dot-survival_scores",
      "title": ".survival_scores",
      "topics": [
        ".survival_scores"
      ]
    },
    {
      "page": "ls_test_results",
      "title": "A data file used for testing sGBJ",
      "topics": [
        "ls_test_results"
      ]
    },
    {
      "page": "sGBJ",
      "title": "Compute the sGBJ statistic and its p-value quantifying a gene set expression association with survival",
      "topics": [
        "sGBJ"
      ]
    },
    {
      "page": "sGBJ_scores",
      "title": "Compute the sGBJ statistic along with its p-value quantifying the association between a gene set and survival outcome",
      "topics": [
        "sGBJ_scores"
      ]
    },
    {
      "page": "surv_calc_scores_stats",
      "title": "surv_calc_scores_stats",
      "topics": [
        "surv_calc_scores_stats"
      ]
    }
  ],
  "_readme": "https://github.com/lauravillain/sgbj/raw/HEAD/README.md",
  "_rundeps": [
    "BH",
    "GBJ",
    "lattice",
    "Matrix",
    "mvtnorm",
    "Rcpp",
    "RcppEigen",
    "RSpectra",
    "SKAT",
    "SPAtest",
    "survival"
  ],
  "_score": 3,
  "_indexed": true,
  "_nocasepkg": "sgbj",
  "_universes": [
    "lauravillain"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-06-02T10:40:41.000Z",
      "distro": "noble",
      "commit": "c7ee17207ec9673dd8f8445ae0f1e687a77621ce",
      "fileid": "f074a2f9ceff7f8718a7fc378f5e3a6d2dfd85c8ca1a1e209d6a9ec15ec949ab",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lauravillain/actions/runs/26814262525"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.1",
      "date": "2026-06-02T10:40:37.000Z",
      "distro": "noble",
      "commit": "c7ee17207ec9673dd8f8445ae0f1e687a77621ce",
      "fileid": "0e2f9c3cb417ead374f9483a00e2610c022b6f4f481f01cfe425d1d49cb3b603",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lauravillain/actions/runs/26814262525"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-06-02T10:46:45.000Z",
      "commit": "c7ee17207ec9673dd8f8445ae0f1e687a77621ce",
      "fileid": "38aae3a39d2250664ae71d77fbf63f09fc409dd6ca0df029d1d1141dfa5d9348",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lauravillain/actions/runs/26814262525"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.1",
      "date": "2026-06-02T10:47:10.000Z",
      "commit": "c7ee17207ec9673dd8f8445ae0f1e687a77621ce",
      "fileid": "ef12e9cf531693aec9954f4a88eb93549860eb9668c74910201721f6fa25f360",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lauravillain/actions/runs/26814262525"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.1",
      "date": "2026-06-02T10:40:32.000Z",
      "commit": "c7ee17207ec9673dd8f8445ae0f1e687a77621ce",
      "fileid": "4dcb0ec59723c8d59029f6e0ff395d7a22cb1f15ba3af1c202d79f7298360996",
      "status": "success",
      "buildurl": "https://github.com/r-universe/lauravillain/actions/runs/26814262525"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-06-02T10:40:00.000Z",
      "commit": "c7ee17207ec9673dd8f8445ae0f1e687a77621ce",
      "fileid": "a0d4a5e31aac170e59653f0b5a4fa4720ac5ed7bbdd41030983500c26a8fae06",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lauravillain/actions/runs/26814262525"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-06-02T10:40:21.000Z",
      "commit": "c7ee17207ec9673dd8f8445ae0f1e687a77621ce",
      "fileid": "7ececbb0c5b1365da3be3f1f2b493f38ec737e8fa0d8fbd36033475e974ad2ca",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lauravillain/actions/runs/26814262525"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.1",
      "date": "2026-06-02T10:39:56.000Z",
      "commit": "c7ee17207ec9673dd8f8445ae0f1e687a77621ce",
      "fileid": "3021d159c74e555003d9d9beb7b5777cfd87ad0085adca163307fba9c15f9422",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/lauravillain/actions/runs/26814262525"
    }
  ]
}