Package: sGBJ 0.1.0
Laura Villain
sGBJ: Survival Extension of the Generalized Berk-Jones Test
Implements an extension of the Generalized Berk-Jones (GBJ) statistic for survival data, sGBJ. It computes the sGBJ statistic and its p-value for testing the association between a gene set and a time-to-event outcome with possible adjustment on additional covariates. Detailed method is available at Villain L, Ferte T, Thiebaut R and Hejblum BP (2021) <doi:10.1101/2021.09.07.459329>.
Authors:
sGBJ_0.1.0.tar.gz
sGBJ_0.1.0.zip(r-4.5)sGBJ_0.1.0.zip(r-4.4)sGBJ_0.1.0.zip(r-4.3)
sGBJ_0.1.0.tgz(r-4.4-any)sGBJ_0.1.0.tgz(r-4.3-any)
sGBJ_0.1.0.tar.gz(r-4.5-noble)sGBJ_0.1.0.tar.gz(r-4.4-noble)
sGBJ_0.1.0.tgz(r-4.4-emscripten)sGBJ_0.1.0.tgz(r-4.3-emscripten)
sGBJ.pdf |sGBJ.html✨
sGBJ/json (API)
NEWS
| # Install 'sGBJ' in R: |
| install.packages('sGBJ', repos = c('https://lauravillain.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/lauravillain/sgbj/issues
- ls_test_results - A data file used for testing sGBJ
Last updated 3 years agofrom:176c792bc1. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 02 2024 |
| R-4.5-win | OK | Sep 02 2024 |
| R-4.5-linux | OK | Sep 02 2024 |
| R-4.4-win | OK | Sep 02 2024 |
| R-4.4-mac | OK | Sep 02 2024 |
| R-4.3-win | OK | Sep 02 2024 |
| R-4.3-mac | OK | Sep 02 2024 |
Exports:sGBJsGBJ_scoressurv_calc_scores_stats
Dependencies:BHGBJlatticeMatrixmvtnormRcppRcppEigenRSpectraSKATSPAtestsurvival
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| .epsilon_matrix | .epsilon_matrix |
| .survival_scores | .survival_scores |
| A data file used for testing sGBJ | ls_test_results |
| Compute the sGBJ statistic and its p-value quantifying a gene set expression association with survival | sGBJ |
| Compute the sGBJ statistic along with its p-value quantifying the association between a gene set and survival outcome | sGBJ_scores |
| surv_calc_scores_stats | surv_calc_scores_stats |
